The transformer CT does no go direct to chassis but it is above it by a 300 ohm multi-tap resistor.
The schematic shows the voltages at the 3 tap points as 3v, 4v, and 13.5v and the schematic note says these points are measured from ground (chassis?) as a reference.
The thing is I measure these all as negative values with respect to the chassis.
Is that correct? And if so why does the schematic show them as positive values?
If you can't read that schematic clearly use the model 225 which is basically the same circuit but the picture is larger and clearer:
http://www.nostalgiaair.org/PagesByModel/220/M0009220.pdf
Regarding the voltages, it is odd that they didn't put a minus sign at the voltages. However, you can always assume that with this conventional circuit, the center tap is going to be more negative than the chassis. Current only flows one way through a rectifier. It flows from cathode to anode. Therefore the plates are more positive than the cathode, the cathode is more positive than the chassis, and the chassis is more positive than the center tap. I'd go into more detail regarding actual electron flow verses conseptual thought on the subject, but this would only confuse matters. By reading the above you can get the basic idea as to which direction the electrons are actually flowing.
Thomas